# Publication: Computational modeling of in vitro neuronal networks with Brian (and thanks!)

**URL:** <https://brian.discourse.group/t/publication-computational-modeling-of-in-vitro-neuronal-networks-with-brian-and-thanks/1031>\
**Category:** Showcase\
**Tags:** publication\
**Created:** [25 July 2023 08:14 UTC](https://brian.discourse.group/t/publication-computational-modeling-of-in-vitro-neuronal-networks-with-brian-and-thanks/1031 "2023-07-25T08:14:25Z")\
**Posts on this page:** 3\
**Page:** 1

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**Author:** ![NinaD](https://avatars.discourse-cdn.com/v4/letter/n/7ba0ec/32.png) [@NinaD](https://brian.discourse.group/u/NinaD)\
**Post date:** [25 July 2023 08:14 UTC](https://brian.discourse.group/t/publication-computational-modeling-of-in-vitro-neuronal-networks-with-brian-and-thanks/1031/1 "2023-07-25T08:14:25Z")

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Hi there!

I just wanted to let you know that our work using the brian2 simulator got published in Stem Cell Reports:  
[https://www.cell.com/stem-cell-reports/fulltext/S2213-6711(23)00232-1?\_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2213671123002321%3Fshowall%3Dtrue](https://www.cell.com/stem-cell-reports/fulltext/S2213-6711(23)00232-1?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2213671123002321%3Fshowall%3Dtrue)

I started this work during my master thesis back in 2021 and at the time I received so much great help from you on this forum. So thank you all a lot for the quick replies and extensive answers to all my questions. The brian2 simulator is truly an amazing package and I plan to continue using it during my PhD!

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**Author:** ![mstimberg](https://yyz2.discourse-cdn.com/free1/user_avatar/brian.discourse.group/mstimberg/32/11_2.png) [@mstimberg](https://brian.discourse.group/u/mstimberg)\
**Post date:** [25 July 2023 13:01 UTC](https://brian.discourse.group/t/publication-computational-modeling-of-in-vitro-neuronal-networks-with-brian-and-thanks/1031/2 "2023-07-25T13:01:27Z")

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Very cool, thanks for sharing. For anyone interested in the Brian code, it’s here: [Model\_Python · main · DoornN / MEA Model · GitLab](https://gitlab.utwente.nl/m7706783/mea-model/-/tree/main/Model_Python) 😊

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**Author:** ![kjohnsen](https://yyz2.discourse-cdn.com/free1/user_avatar/brian.discourse.group/kjohnsen/32/200_2.png) [@kjohnsen](https://brian.discourse.group/u/kjohnsen)\
**Post date:** [12 March 2024 17:05 UTC](https://brian.discourse.group/t/publication-computational-modeling-of-in-vitro-neuronal-networks-with-brian-and-thanks/1031/3 "2024-03-12T17:05:49Z")

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For anyone wanting to simulate MEAs in the future, Cleo makes this easy, and lets you get both spikes and LFP out: [cleo/notebooks/newman15\_validation.ipynb at master · siplab-gt/cleo (github.com)](https://github.com/siplab-gt/cleo/blob/96be1e5bd4d29d73d1ddd1477bc23f256029d28d/notebooks/newman15_validation.ipynb)