who knows that how can i plot single peak and multi peak calcium oscillation ?
This is not my area of expertise, but this looks like a reasonable mathematical model which could be replicated in Brian:
“On the dynamical structure of calcium oscillations” (2017) Sneyd et al.
the equations for the model show up in the supplemental material here: [link to supplement]
thank you so much for your help, and can we plot heat map with brian2 ?
Here are Brian’s built in plotting functions:
while there is a heatmap available for plotting synaptic connections, I think it would be simpler to use a heatmap from a dedicated python plotting library.
I like matplotlib and plotly.
Here’s how to make a heatmap with seaborn (which is based on matplotlib):
And here’s how to make a heatmap with plotly (this has the added benefit of being interactive)
thank you adam so much , i will put my results here as soon as possible